Skip to main content

Cassava virus: Journey from the lab to the field - Learning the ropes

Weeks 2 – 3


It’s been a bit of blur the last two weeks, getting to grips with all the activities that go on at the  National Crops Resources Research Institute (NaCRRI). I’ve spent time with Dr. Emmanuel Ogwok (Emmy), learning about the earlier days of Cassava brown streak disease (CBSD) research and how things have developed. Emmy took me on a tour to see the greenhouses where they are growing genetically modified cassava, which shows resistance to CBSD.
Dr. Emmanuel Ogwok demonstrates how to sample infected cassava from the field

Diagnosing the problem


Emmy also introduced to me how they diagnose CBSD infections. We headed out to the field and sampled cassava plants showing CBSD symptoms, processed the samples in the lab and bingo, identified the presence of the virus in all the samples by reverse transcription PCR. This is similar to the processes we follow in the UK. It was great to actually sample the infected cassava from the field myself; in the UK we normally use material which was collected years ago.

It was interesting to learn about challenges, such as getting hold of reagents which can take up to three months! The lab is responsible for testing new cassava varieties for their ability to resist CBSD infection and plays a vital role in improving cassava production.

Processing the infected cassava samples from the field

Communicating the problem


I’ve been working on communication materials to let members of the public know about NaCRRI work at the Source of the Nile agricultural trade show in July. The show will be an opportunity to present and discuss the improved cassava varieties developed by NaCRRI with policy makers, growers and members of the public.

Kampala fun


Outside of work, I’ve been having fun in Kampala; going to arts festivals, watching the football in Ugandan pubs and swimming in the Hotel Africana pool. Next week, I’m planning to visit field sites in northern Uganda, to meet some of the farmers affected by CBSD.

Dancer at La Ba Arts Festival (credit HB Visual)
-----------------------------------
This blog has been written by University of Bristol Cabot Institute member Katie Tomlinson from the School of Biological Sciences.  Katie's area of research is to generate and exploit an improved understanding of cassava brown streak disease (CBSD) to ensure sustainable cassava production in Africa.  This blog has been reposted with kind permission from Katie's blog Cassava Virus

Katie Tomlinson
More from this blog series:  

Popular posts from this blog

Powering the economy through the engine of Smart Local Energy Systems

How can the Government best retain key skills and re-skill and up-skill the UK workforce to support the recovery and sustainable growth? This summer the UK’s Department for Business, Energy and Industrial Strategy (BEIS) requested submission of inputs on Post-Pandemic Economic Growth. The below thoughts were submitted to the BEIS inquiry as part of input under the EnergyREV project . However, there are points raised here that, in the editing and summing up process of the submission, were cut out, hence, this blog on how the UK could power economic recovery through Smart Local Energy Systems (SLES). 1. Introduction: Factors, principles, and implications In order to transition to a sustainable and flourishing economy from our (post-)COVID reality, we must acknowledge and address the factors that shape the current economic conditions. I suggest to state the impact of such factors through a set of driving principles for the UK’s post-COVID strategy. These factors are briefly explained belo

Farming in the Páramos of Boyacá: industrialisation and delimitation in Aquitania

Labourers harvest ‘cebolla larga’ onion in Aquitania. Image credit: Lauren Blake. In October and November 2019 Caboteer  Dr Lauren Blake  spent time in Boyacá, Colombia, on a six-week fieldtrip to find out about key socio-environmental conflicts and the impacts on the inhabitants of the páramos, as part of the historical and cultural component of her research project, POR EL Páramo . Background information about the research can be found in the earlier blog on the project website . Descending down the hill in the bus from El Crucero, the pungent smell of cebolla larga onion begins to invade my nose. The surrounding land transforms into plots of uniform rows of onion tops at various stages of growth, some mostly brown soil with shoots poking out along the ridges, others long, bushy and green. Sandwiched between the cloud settled atop the mountainous páramos and the vast, dark blue-green Lake Tota, all I can see and all I can smell is onion production. Sprinklers are scattered around, dr

IncrEdible! How to save money and reduce waste

The new academic year is a chance to get to grips with managing your student loan and kitchen cupboards. Over lockdown the UK wasted a third less food than we usually would. This is brilliant, as normally over 4.5 million tonnes of edible food is wasted from UK homes every year. For students, it’s even higher. The average cost of food waste per student per week is approximately £5.25 - that's about £273 per year !  It’s not just our bank accounts that are affected by food waste – it’s our planet too. The process of growing, making, distributing, storing and cooking our food uses masses of energy, fuel and water. It generates 30% of the world’s CO₂ greenhouse gas emissions. The same amount of CO₂ as 4.6 million return flights from London to Perth, Australia! So it makes sense to keep as much food out of the bin as possible, start wasting less and saving more.  Start the new term with some food waste busting, budget cutting, environment loving habits! Here’s five easy ways to reduce